flowCore - flowCore: Basic structures for flow cytometry data

Provides S4 data structures and basic functions to deal with flow cytometry data.

Last updated 4 months ago

immunooncologyinfrastructureflowcytometrycellbasedassays

7.16 score 10 dependencies 56 dependents

ggcyto - Visualize Cytometry data with ggplot

With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.

Last updated 4 months ago

immunooncologyflowcytometrycellbasedassaysinfrastructurevisualization

54 stars 4.34 score 61 dependencies 5 dependents

flowViz - Visualization for flow cytometry

Provides visualization tools for flow cytometry data.

Last updated 4 months ago

immunooncologyinfrastructureflowcytometrycellbasedassaysvisualization

4.26 score 23 dependencies 12 dependents

CytoML - A GatingML Interface for Cross Platform Cytometry Data Sharing

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

Last updated 4 months ago

immunooncologyflowcytometrydataimportdatarepresentation

29 stars 3.08 score 75 dependencies

openCyto - Hierarchical Gating Pipeline for flow cytometry data

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Last updated 4 months ago

immunooncologyflowcytometrydataimportpreprocessingdatarepresentation

2.97 score 69 dependencies 1 dependents

ncdfFlow - ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Last updated 4 months ago

immunooncologyflowcytometry

2.80 score 12 dependencies 11 dependents