ggcyto - Visualize Cytometry data with ggplot

With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.

Last updated 24 days ago

immunooncologyflowcytometrycellbasedassaysinfrastructurevisualization

11.41 score 56 stars 5 packages 368 scripts 1.5k downloads

flowCore - flowCore: Basic structures for flow cytometry data

Provides S4 data structures and basic functions to deal with flow cytometry data.

Last updated 24 days ago

immunooncologyinfrastructureflowcytometrycellbasedassays

10.66 score 59 packages 1.8k scripts 4.7k downloads

CytoML - A GatingML Interface for Cross Platform Cytometry Data Sharing

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

Last updated 24 days ago

immunooncologyflowcytometrydataimportdatarepresentation

8.47 score 30 stars 130 scripts 942 downloads

openCyto - Hierarchical Gating Pipeline for flow cytometry data

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Last updated 24 days ago

immunooncologyflowcytometrydataimportpreprocessingdatarepresentation

7.54 score 1 packages 350 scripts 1.1k downloads

flowViz - Visualization for flow cytometry

Provides visualization tools for flow cytometry data.

Last updated 24 days ago

immunooncologyinfrastructureflowcytometrycellbasedassaysvisualization

7.42 score 12 packages 226 scripts 1.6k downloads

ncdfFlow - ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Last updated 24 days ago

immunooncologyflowcytometry

7.29 score 11 packages 85 scripts 1.8k downloads