ggcyto - Visualize Cytometry data with ggplot
With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.
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immunooncologyflowcytometrycellbasedassaysinfrastructurevisualization
12.57 score 66 stars 7 dependents 916 scripts 2.6k downloadsflowCore - flowCore: Basic structures for flow cytometry data
Provides S4 data structures and basic functions to deal with flow cytometry data.
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immunooncologyinfrastructureflowcytometrycellbasedassayscurlopensslopenblascpp
9.11 score 65 dependents 37 scripts 7.1k downloads
CytoML - A GatingML Interface for Cross Platform Cytometry Data Sharing
Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.
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immunooncologyflowcytometrydataimportdatarepresentationcurlopensslopenblaslibxml2cpp
8.18 score 34 stars 2 scripts 1.9k downloadsflowViz - Visualization for flow cytometry
Provides visualization tools for flow cytometry data.
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immunooncologyinfrastructureflowcytometrycellbasedassaysvisualization
8.06 score 16 dependents 260 scripts 3.1k downloadscytolib - C++ infrastructure for representing and interacting with the gated cytometry data
This package provides the core data structure and API to represent and interact with the gated cytometry data.
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immunooncologyflowcytometrydataimportpreprocessingdatarepresentation
7.08 score 66 dependents 6.0k downloadsopenCyto - Hierarchical Gating Pipeline for flow cytometry data
This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
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immunooncologyflowcytometrydataimportpreprocessingdatarepresentationcpp
7.03 score 3 dependents 2 scripts 2.6k downloadsncdfFlow - ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.
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immunooncologyflowcytometrycurlopensslcpp
6.51 score 16 dependents 3.4k downloads